| Team | W | L |
| 49ers | 13 | 3 |
| Cardinals | 8 | 8 |
| Seahawks | 7 | 9 |
| Rams | 2 | 14 |
| Pre | |||
| 12-Aug | @Saints | L | 3-24 |
| 20-Aug | Raiders | W | 17-3 |
| 27-Aug | Texans | L | 7-30 |
| 1-Sep | @Chargers | W | 20-17 |
| Reg | |||
| 11-Sep | Seahawks | W | 33-17 |
| 18-Sep | Cowboys | L | 24-27 |
| 25-Sep | @Bengals | W | 13-8 |
| 2-Oct | @Eagles | W | 24-23 |
| 9-Oct | Buccaneers | W | 48-3 |
| 16-Oct | @Lions | W | 25-19 |
| 30-Oct | Browns | W | 20-10 |
| 6-Nov | @Redskins | W | 19-11 |
| 13-Nov | Giants | W | 27-20 |
| 20-Nov | Cardinals | W | 23-7 |
| 24-Nov | @Ravens | L | 6-16 |
| 4-Dec | Rams | W | 26-0 |
| 11-Dec | @Cardinals | L | 19-21 |
| 19-Dec | Steelers | W | 20-3 |
| 24-Dec | @Seahawks | W | 19-17 |
| 1-Jan | @Rams | W | 34-27 |
| # | Name | Pos. | College | Acquired | Signed |
| 0 | LeGree, Mark | FS | Appalachian State | 2012-FA | 2013 |
| 0 | Wiggins, Kenny | OT | Fresno State | 2012-FA | 2013 |
| 0 | Nelson, Kyle | LS | New Mexico State | 2012-FA | 2013 |
| 0 | Chisolm, Garrett | OG | South Carolina | 2012-FA | 2013 |
| 2 | Akers, David | PK | Louisville | 2011-UFA(PHI) | 2013 |
| 3 | Tolzien, Scott | QB | Wisconsin | 2011-W(SD) | 2013 |
| 4 | Lee, Andy | P | Pittsburgh | 2004-6th Round | 2012 |
| 7 | Kaepernick, Colin | QB | Nevada | 2011-2nd Round | 2014 |
| 9 | Bogan, Dontavia | WR | South Florida | 2011-UDFA | 2013 |
| 10 | Williams, Kyle | WR | Arizona State | 2010- 6th Round | 2013 |
| 13 | Hastings, Joe | WR | Washburn | 2011-UDFA | 2013 |
| 15 | Crabtree, Michael | WR | Texas Tech | 2009-1st Round | 2014 |
| 21 | Gore, Frank | RB | Miami (FL) | 2005-3rd Round | 2014 |
| 23 | Nelms, Cory | CB | Miami(Fla.) | 2011-UDFA | 2013 |
| 24 | Dixon, Anthony | RB | Mississippi State | 2010-6th Round | 2013 |
| 25 | Brown, Tarell | CB | Texas | 2007-5th round | 2013 |
| 29 | Culliver, Chris | CB | South Carolina | 2011-3rd Round | 2014 |
| 31 | Whitner, Donte | SS | Ohio State | 2011-UFA(NO) | 2013 |
| 32 | Hunter, Kendall | RB | Oklahoma State | 2011-4th Round | 2014 |
| 36 | Spencer, Shawntae | CB | Pittsburgh | 2004-2nd Round | 2012 |
| 41 | Holcomb, Curtis | CB | Florida A&M | 2011-7th Round | 2014 |
| 43 | Jones, Colin | SS | TCU | 2011-6th Round | 2014 |
| 46 | Walker, Delanie | TE | Central Missouri State | 2006-6th Round | 2012 |
| 49 | Miller, Bruce | FB | Central Florida | 2011-7th Round | 2014 |
| 52 | Willis, Patrick | ILB | Ole Miss. | 2007-1st round | 2016 |
| 53 | Bowman, NaVorro | ILB | Penn State | 2010-3rd Round | 2013 |
| 57 | Wilhoite, Michael | OLB | Washburn | 2013 | |
| 59 | Goodwin, Jonathan | C | Michigan | 2011-UFA(NO) | 2013 |
| 61 | Beeler, Chase | C | Stanford | 2011-UDFA | 2013 |
| 67 | Kilgore, Daniel | OG | Appalachian State | 2011-5th Round | 2014 |
| 71 | Hall, Derek | OT | Stanford | 2011-UDFA | 2013 |
| 74 | Staley, Joe | LT | Central Michigan | 2007-1st round | 2017 |
| 75 | Boone, Alex | RT | Ohio State | 2009-UDFA | 2015 |
| 76 | Davis, Anthony | RT | Rutgers | 2010-1st Round | 2014 |
| 77 | Iupati, Mike | LG | Idaho | 2010-1st Round | 2014 |
| 78 | Person, Mike | OG | Montana State | 2011-7th Round | 2014 |
| 82 | Byham, Nate | TE | Pittsburgh | 2010-6th Round | 2013 |
| 83 | Matthews, John | WR | San Diego | 2011-FA | 2011 |
| 85 | Davis, Vernon | TE | Maryland | 2006-1st Round | 2015 |
| 86 | Jennings, Brian | LS | Arizona State | 2000-7th Round | 2014 |
| 88 | Reuland, Konrad | TE | Stanford | 2011-UDFA | 2013 |
| 90 | Sopoaga, Isaac | NT | Hawaii | 2004-4th Round | 2012 |
| 91 | McDonald, Ray | DE | Florida | 2007-3rd round | 2015 |
| 93 | Williams, Ian | NT | Notre Dame | 2011-UDFA | 2013 |
| 94 | Smith, Justin | DE | Missouri | 2008-UFA(CIN) | 2013 |
| 95 | Jean Francois, Ricky | NT | LSU | 2009-7th Round | 2012 |
| 96 | Dobbs, Demarcus | DE | Georgia | 2011-UDFA | 2013 |
| 98 | Haralson, Parys | OLB | Tennessee | 2006-5th Round | 2013 |
| 99 | Smith, Aldon | OLB | Missouri | 2011-1st Round | 2014 |
| # | Name | Pos. | College | Acquired | Signed |
| # | Name | Pos. | College | Acquired | Signed |
| # | Name | Pos. | College | Acquired | Signed |
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